Stem-loop sequence eca-mir-494

Accession MI0012907
Description Equus caballus miR-494 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
      c            gu      -   c   -  uuu 
gauacu gaaggagagguu  ccgugu ugu uuc uc   a
|||||| ||||||||||||  |||||| ||| ||| ||   u
cuauga uuuuuucuccaa  ggcaca aca aag ag   u
      -            ag      u   -   u  uau
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42902171-42902251 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-494
eca-mir-379 24: 42894643-42894709 [+]
eca-mir-411 24: 42895895-42895976 [+]
eca-mir-299 24: 42896363-42896425 [+]
eca-mir-380 24: 42897592-42897652 [+]
eca-mir-1197 24: 42898113-42898232 [+]
eca-mir-323 24: 42898304-42898389 [+]
eca-mir-758 24: 42898599-42898683 [+]
eca-mir-329 24: 42899352-42899449 [+]
eca-mir-494 24: 42902171-42902251 [+]
eca-mir-1193 24: 42902577-42902697 [+]
eca-mir-543 24: 42904247-42904318 [+]
eca-mir-495 24: 42906084-42906165 [+]
eca-mir-376c 24: 42911104-42911169 [+]
eca-mir-376b 24: 42911856-42911937 [+]
Database links
  • ENTREZGENE: 100314915;MIR494

Mature sequence eca-miR-494

Accession MIMAT0013164
Sequence

48 -  

ugaaacauacacgggaaaccuc

 - 69

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).