Stem-loop eca-mir-655

Accession

MI0012914

Description

Equus caballus eca-mir-655 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

9 reads, 1 reads per million, 1 experiments

aacuguucaaggauauuugaggagagguuauccguguuauguucgcuucauucaucaugaAUAAUACAUGGUUAACCUCUUUuugaauaucagacuc
...........(((((((((((((((((((.((((((..((((((............))))))..)))))).)))))))))))))))))))......

Structure

aacuguucaag                   u      ua      cuuca 
           gauauuugaggagagguua ccgugu  uguucg     u
           ||||||||||||||||||| ||||||  ||||||      
           cuauaaguuUUUCUCCAAU GGUACA  AUAagu     u
-----cucaga                   U      UA      acuac 

Annotation confidence Not enough data

Genome context

chr24: 42919594-42919690 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from eca-mir-655

Mature eca-miR-655

• Accession: MIMAT0013171
• Description: Equus caballus eca-miR-655 mature miRNA
• Sequence: 61 - AUAAUACAUGGUUAACCUCUUU - 82
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131