miRBase entry: eca-mir-758

Stem-loop eca-mir-758


Accession
MI0012916
Description
Equus caballus eca-mir-758 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

182 reads, 28 reads per million, 1 experiments
gccuggguacaugagaugguugaccagagagcacacgcuuuauuugugccgUUUGUGACCUGGUCCACUAACCcucaguaucuaa
...(((((((.((((.((((.((((((.(.(((.((((.........).))).)))..))))))).))))...))))))))))).

Structure
gcc       a    --a    u      a -a   c   - uuu 
   uggguac ugag   uggu gaccag g  gca acg c   a
   ||||||| ||||   |||| |||||| |  ||| ||| |   u
   aucuaug acuc   AUCA CUGGUC C  UGU Ugc g   u
--a       -    CCA    C      - AG   U   c ugu 


Annotation confidence Not enough data
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Genome context
chr24: 42898599-42898683 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from eca-mir-758
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-758

Accession MIMAT0013173
Description Equus caballus eca-miR-758 mature miRNA
Sequence 52 - UUUGUGACCUGGUCCACUAACC - 73
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131