miRBase entry: eca-mir-889

Stem-loop eca-mir-889


Accession
MI0012918
Description
Equus caballus eca-mir-889 precursor miRNA
Gene family
MIPF0000514; mir-889


Sequence

1237 reads, 187 reads per million, 1 experiments
gugcuuaaagaauggcugucuguaguauggucuccauauucauggugaUUAAUAUCGGACAACCAUUGUuuuaguauc
(((((.(((.(((((.((((((..((.(((((.((((....)))).)))))))..)))))).))))).))).))))).

Structure
-     u   g     c      ua  a     u    a 
 gugcu aaa aaugg ugucug  gu ugguc ccau u
 ||||| ||| ||||| ||||||  || ||||| ||||  
 uauga uuU UUACC ACAGGC  UA AUUag ggua u
c     u   G     A      UA  -     u    c 


Annotation confidence Not enough data
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Genome context
chr24: 42917940-42918017 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from eca-mir-889
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-889

Accession MIMAT0013175
Description Equus caballus eca-miR-889 mature miRNA
Sequence 49 - UUAAUAUCGGACAACCAUUGU - 69
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131