miRBase entry: eca-mir-181a

Stem-loop eca-mir-181a


Accession
MI0012920
Description
Equus caballus eca-mir-181a precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
4 open access papers mention eca-mir-181a
(10 sentences)

Sequence

129168 reads, 19553 reads per million, 1 experiments
aagggcugccaggacccagccuucagaggacuccaaggAACAUUCAACGCUGUCGGUGAGUuugggauuugaaaaaaccaccgaccguugacuguaccuugggguccuua
.(((((((........)))))))..(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))))))))))).

Structure
aagggcugccaggacccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagccac caaa    u
------------------------a             a   c      --       -    aaag 


Annotation confidence Not enough data
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Genome context
chr25: 28672622-28672731 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-181a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-181a

Accession MIMAT0013178
Description Equus caballus eca-miR-181a mature miRNA
Sequence 39 - AACAUUCAACGCUGUCGGUGAGU - 61
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131