Stem-loop eca-mir-181b

Accession

MI0012921

Description

Equus caballus eca-mir-181b precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

3 open access papers mention eca-mir-181b
(8 sentences)

Sequence

4305 reads, 652 reads per million, 1 experiments

cugauggcugcacucAACAUUCAUUGCUGUCGGUGGGUuugagucugaaucaacucacugaucaaugaaugcaaacugcggaccaaaca
....((((((((.....(((((((((..(((((((((((.((.......)))))))))))))))))))))).....))))).)))....

Structure

cuga   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUu ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

Annotation confidence Not enough data

Genome context

chr25: 28673901-28673989 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-181b

Mature eca-miR-181b

• Accession: MIMAT0013179
• Description: Equus caballus eca-miR-181b mature miRNA
• Sequence: 16 - AACAUUCAUUGCUGUCGGUGGGU - 38
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131