miRBase entry: eca-mir-486

Stem-loop eca-mir-486


Accession
MI0012931
Description
Equus caballus eca-mir-486 precursor miRNA
Gene family
MIPF0000220; mir-486

Literature search
6 open access papers mention eca-mir-486
(19 sentences)

Sequence

76639 reads, 5818 reads per million, 1 experiments
ggaUCCUGUACUGAGCUGCCCCGAGgcccuucacugugcccagcuCGGGGCAGCUCAGUACAGGAU
..(((((((((((((((((((((((((.(......).)))....))))))))))))))))))))))

Structure
gg                      ----   c uu 
  aUCCUGUACUGAGCUGCCCCGA    Ggc c  c
  ||||||||||||||||||||||    ||| |   
  UAGGACAUGACUCGACGGGGCu    ccg g  a
--                      cgac   u uc 


Annotation confidence Not enough data
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Genome context
chr27: 3709569-3709634 [+]

Database links

Mature eca-miR-486-5p

Accession MIMAT0013186
Description Equus caballus eca-miR-486-5p mature miRNA
Sequence 4 - UCCUGUACUGAGCUGCCCCGAG - 25
Evidence not_experimental

Mature eca-miR-486-3p

Accession MIMAT0013187
Description Equus caballus eca-miR-486-3p mature miRNA
Sequence 46 - CGGGGCAGCUCAGUACAGGAU - 66
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131