Stem-loop eca-mir-135a-2

Accession

MI0012933

Description

Equus caballus eca-mir-135a-2 precursor miRNA

Gene family

MIPF0000028; mir-135

Literature search

2 open access papers mention eca-mir-135a-2
(13 sentences)

Sequence

46 reads, 7 reads per million, 1 experiments

agauaaauucacucuagugcuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucauguagggauggaagccaugaaauacauugugaaaaauca
.(((...(((((....(((.((((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))).)))...)))))..))).

Structure

a   aaa     ucua   c            U            u g a 
 gau   uucac    gug uuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    ||| |||||||||||| |||||||||||| | | u
 cua   aagug    cau aaguaccgaagg uagggauguacu u a a
a   -aa     -uua   a            -            c g a 

Annotation confidence Not enough data

Genome context

chr28: 22270398-22270497 [+]

Mature eca-miR-135a

• Accession: MIMAT0013078
• Description: Equus caballus eca-miR-135a mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131