Stem-loop eca-mir-181a-2

Accession

MI0012936

Description

Equus caballus eca-mir-181a-2 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

3 open access papers mention eca-mir-181a-2
(6 sentences)

Sequence

128681 reads, 19479 reads per million, 1 experiments

ugagucugaggguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuaaaaucaaaaccaucgaccguugauugugcccuguggcuagccauccucuccucca
.(((...((((((((((.(((...(((.((((((..(((((((.((((.((.......)).))))))))))))))))).)))...))).))).)))...))))..)))..

Structure

-u   ucu    ---   -   u   ugA   U      CU       A    g  au 
  gag   gagg   guu gcu cag   ACA UCAACG  GUCGGUG GUuu ga  u
  |||   ||||   ||| ||| |||   ||| ||||||  ||||||| |||| ||  a
  cuc   cucc   cga cgg guc   ugu aguugc  cagcuac caaa cu  a
ac   -cu    uac   u   u   ccg   u      --       -    a  aa 

Annotation confidence High

Genome context

chr30: 26398918-26399027 [-]

Mature eca-miR-181a

• Accession: MIMAT0013178
• Description: Equus caballus eca-miR-181a mature miRNA
• Sequence: 24 - AACAUUCAACGCUGUCGGUGAGU - 46
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131