Stem-loop eca-mir-194b

Accession

MI0012937

Description

Equus caballus eca-mir-194b precursor miRNA

Literature search

1 open access papers mention eca-mir-194b
(1 sentences)

Sequence

141327 reads, 219.0 reads per million, 189 experiments

auggggucaucaagUGUAACAGCAACUCCAUGUGGAcuggguaccaauuuCCAGUGGAGAUGCUGUUACUUuugaugguuaccaa
.(((..((((((((.(((((((((.((((((.((((.(((...)))...)))))))))).))))))))).))))))))...))).

Structure

a   -gg        U         A      G    --c   g 
 ugg   ucaucaag GUAACAGCA CUCCAU UGGA   ugg  
 |||   |||||||| ||||||||| |||||| ||||   ||| u
 acc   gguaguuU CAUUGUCGU GAGGUG ACCu   acc  
a   auu        U         A      -    uua   a 

Annotation confidence Not enough data

Genome context

30: 10716097-10716181 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-194b

Mature eca-miR-194b-5p

• Accession: MIMAT0062442
• Description: Equus caballus eca-miR-194b-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: experimental ; Illumina [1]

Mature eca-miR-194b-3p

• Accession: MIMAT0051394
• Description: Equus caballus eca-miR-194b-3p mature miRNA
• Sequence: 51 - CCAGUGGAGAUGCUGUUACUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131