Stem-loop eca-mir-105

Accession

MI0012941

Description

Equus caballus eca-mir-105 precursor miRNA

Gene family

MIPF0000074; mir-105

Sequence

7 reads, 1 reads per million, 1 experiments

ugugcaucguagUCAAAUGCUCAGACUCCUGUGGUggccguucaugcaccacggauguuugagcaugugcuauggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gccg 
   gcaucguag CA AUGCUCAGAC  CUGUGGUg    u
   ||||||||| || ||||||||||  ||||||||     
   ugugguauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guac 

Annotation confidence Not enough data

Genome context

chrX: 120986968-120987048 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-105

Mature eca-miR-105

• Accession: MIMAT0013193
• Description: Equus caballus eca-miR-105 mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUGUGGU - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131