miRBase entry: eca-mir-1912

Stem-loop eca-mir-1912


Accession
MI0012948
Description
Equus caballus eca-mir-1912 precursor miRNA
Gene family
MIPF0000768; mir-1912

Literature search
1 open access papers mention eca-mir-1912
(1 sentences)

Sequence

9 reads, 1 reads per million, 1 experiments
cucuaggaugugcucauugcaugggcuguguauauuuuuauucaaUACCCAGAGCGUGCAGUGUGAAcauaauagagauu
(((((..((((.(.(((((((((..(((.((((...........)))).)))..))))))))).).))))..)))))...

Structure
---     gg    g u         gg   u    auuu 
   cucua  augu c cauugcaug  cug guau    u
   |||||  |||| | |||||||||  ||| ||||    u
   gagau  uacA G GUGACGUGC  GAC CAUa    a
uua     aa    A U         GA   C    acuu 


Annotation confidence Not enough data
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Genome context
chrX: 90706739-90706818 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-1912
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-1912

Accession MIMAT0013201
Description Equus caballus eca-miR-1912 mature miRNA
Sequence 46 - UACCCAGAGCGUGCAGUGUGAA - 67
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131