miRBase entry: eca-mir-19b-2

Stem-loop eca-mir-19b-2


Accession
MI0012949
Description
Equus caballus eca-mir-19b-2 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
1 open access papers mention eca-mir-19b-2
(2 sentences)

Sequence

1399 reads, 212 reads per million, 1 experiments
acacugcuacuuacgauuaguuuugcagguuugcauuucagcguauauauguauauauggcUGUGCAAAUCCAUGCAAAACUGAuugugauaaugu
..........(((((((((((((((((((((((((...((((.((((((....)))))))))))))))).)).)))))))))))))))))......

Structure
acacugcuac                 -  -      uuu    g      u 
          uuacgauuaguuuugca gg uuugca   cagc uauaua g
          ||||||||||||||||| || ||||||   |||| ||||||  
          aguguuAGUCAAAACGU CC AAACGU   GUcg guauau u
----uguaau                 A  U      ---    -      a 


Annotation confidence Not enough data
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Genome context
chrX: 106692173-106692268 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-19b

Accession MIMAT0013087
Description Equus caballus eca-miR-19b mature miRNA
Sequence 62 - UGUGCAAAUCCAUGCAAAACUGA - 84
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131