Stem-loop eca-mir-20b

Accession

MI0012950

Description

Equus caballus eca-mir-20b precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention eca-mir-20b
(2 sentences)

Sequence

416 reads, 63 reads per million, 1 experiments

aguacCAAAGUGCUCAUAGUGCAGGUAGuuuuggcauuacucuacuguagugugggcacuuccaguacu
(((((..(((((((((((.(((((..(((.........)))...))))).)))))))))))...)))))

Structure

     -CA           G     -GU   uuu 
aguac   AAGUGCUCAUA UGCAG   AGu   g
|||||   ||||||||||| |||||   |||   g
ucaug   uucacgggugu auguc   uca   c
     acc           g     auc   uua 

Annotation confidence Not enough data

Genome context

chrX: 106692311-106692379 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-20b

Mature eca-miR-20b

• Accession: MIMAT0013202
• Description: Equus caballus eca-miR-20b mature miRNA
• Sequence: 6 - CAAAGUGCUCAUAGUGCAGGUAG - 28
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131