Stem-loop eca-mir-222

Accession

MI0012952

Description

Equus caballus eca-mir-222 precursor miRNA

Gene family

MIPF0000051; mir-221

Literature search

1 open access papers mention eca-mir-222
(6 sentences)

Sequence

551 reads, 83 reads per million, 1 experiments

gcugcuggaaaguguagguacccucaauggcucaguagccaguguagauccugucuuuuguaaucagcAGCUACAUCUGGCUACUGGGUcucugauggcaucuucuagcu
...((((((......((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).)))))))))).

Structure

gcu      aagugu    a  c   au              -     auc   ucuu 
   gcugga      aggu cc uca  ggcucaguagccag uguag   cug    u
   ||||||      |||| || |||  |||||||||||||| |||||   |||    u
   cgaucu      ucua gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
--u      ------    c  u   cu              U     GAc   uaau 

Annotation confidence Not enough data

Genome context

chrX: 37091426-37091535 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-222

Mature eca-miR-222

• Accession: MIMAT0013204
• Description: Equus caballus eca-miR-222 mature miRNA
• Sequence: 69 - AGCUACAUCUGGCUACUGGGU - 89
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131