miRBase entry: eca-mir-363

Stem-loop eca-mir-363


Accession
MI0012958
Description
Equus caballus eca-mir-363 precursor miRNA
Gene family
MIPF0000138; mir-363

Literature search
1 open access papers mention eca-mir-363
(1 sentences)

Sequence

5566 reads, 843 reads per million, 1 experiments
uguugucggguggaucacgaugcaauuuugauuaguauaauaggagaaaAAUUGCACGGUAUCCAUCUGUAaacc
.(((..(((((((((..((.(((((((((..(((......)))....)))))))))))..)))))))))..))).

Structure
u   gu         ca  a         --ga   gu 
 guu  cggguggau  cg ugcaauuuu    uua  a
 |||  |||||||||  || |||||||||    |||   
 caa  GUCUACCUA  GC ACGUUAAaa    gau  u
c   AU         UG  -         agag   aa 


Annotation confidence Not enough data
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Genome context
chrX: 106691883-106691957 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-363
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-363

Accession MIMAT0013212
Description Equus caballus eca-miR-363 mature miRNA
Sequence 50 - AAUUGCACGGUAUCCAUCUGUA - 71
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131