Stem-loop sequence eca-mir-502

Accession

MI0012971 (change log)

Description

Equus caballus miR-502 stem-loop

Gene family

MIPF0000139; mir-500

Literature search

1 open access papers mention eca-mir-502
(1 sentences)

Stem-loop

   ugcucc        -         uau ug     uag   ugu 
5'       cccucucu aauccuugc   c  ggugc   ugc   c
         |||||||| |||||||||   |  |||||   |||   u
3'       gggagaga uuaggaacg   g  ccacg   acg   c
   ------        c         --- gu     -ua   uaa 

Deep sequencing

713 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40077407-40077486 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-502

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR502
• miRBase Tracker:MI0012971

Mature sequence eca-miR-502-5p

• Accession: MIMAT0013225
• Sequence: 16 - auccuugcuaucugggugcua - 36
• Deep sequencing: 47 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-502-3p

• Accession: MIMAT0013226
• Sequence: 52 - aaugcaccugggcaaggauuca - 73
• Deep sequencing: 666 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).