miRBase entry: eca-mir-507a

Stem-loop eca-mir-507a


Accession
MI0012975
Description
Equus caballus eca-mir-507a precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

251 reads, 38 reads per million, 1 experiments
cauguugugugcagugcuccacuucaggaagugccauccauguggcuagaaauaugAUUGGCACCUCUUAGAGUGAAguaaugcacaacagguac
....(((((((((.((((.(((((.((((.((((((..(((((........)))))..)))))).)))).))))).)))).))))).))))....

Structure
caug    -     g    c     c    a      uc     ggc 
    uugu gugca ugcu cacuu agga gugcca  caugu   u
    |||| ||||| |||| ||||| |||| ||||||  |||||    
    gaca cacgu augA GUGAG UUCU CACGGU  guaua   a
caug    a     a    A     A    C      UA     aag 


Annotation confidence Not enough data
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Genome context
chrX: 116755935-116756029 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from eca-mir-507a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-507a

Accession MIMAT0013230
Description Equus caballus eca-miR-507a mature miRNA
Sequence 57 - AUUGGCACCUCUUAGAGUGAA - 77
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131