Stem-loop eca-mir-508

Accession

MI0012976

Description

Equus caballus eca-mir-508 precursor miRNA

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention eca-mir-508
(1 sentences)

Sequence

2162 reads, 327 reads per million, 1 experiments

accacucucagcuggguguagugcccUACUCCAGAGGGUGUCAUUCACAuagacuaaagcaUGAUUGUCACCUUUUGGAGUAGAguaauacacaucauggacgauauaugugguggc
(((((((((...((((((((.(((.(((((((((((((((.((.(((..............))).)).))))))))))))))).))).))))).)))..)).)).....)))))...

Structure

---     -----  -  agc   -     g   c               U  U   CAuaga 
   accac     uc uc   ugg gugua ugc cUACUCCAGAGGGUG CA UCA      c
   |||||     || ||   ||| ||||| ||| ||||||||||||||| || |||       
   uggug     ag ag   acu cacau aug GAUGAGGUUUUCCAC GU AGU      u
cgg     uauau  c  -gu   a     a   A               U  U   acgaaa 

Annotation confidence High

Genome context

chrX: 116765762-116765878 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-508

Mature eca-miR-508-5p

• Accession: MIMAT0013231
• Description: Equus caballus eca-miR-508-5p mature miRNA
• Sequence: 27 - UACUCCAGAGGGUGUCAUUCACA - 49
• Evidence: not_experimental

Mature eca-miR-508-3p

• Accession: MIMAT0013232
• Description: Equus caballus eca-miR-508-3p mature miRNA
• Sequence: 62 - UGAUUGUCACCUUUUGGAGUAGA - 84
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131