miRBase entry: eca-mir-532

Stem-loop eca-mir-532


Accession
MI0012979
Description
Equus caballus eca-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
2 open access papers mention eca-mir-532
(3 sentences)

Sequence

2189 reads, 331 reads per million, 1 experiments
gauuugcuuucucucuuaCAUGCCUUGAGUGUAGGACCGUuggcaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagggcaagccu
.....((((.(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).))))))).))))..

Structure
gauuu    u       a  U      A    A   CC  uggca 
     gcuu cucucuu CA GCCUUG GUGU GGA  GU     u
     |||| ||||||| || |||||| |||| |||  ||     c
     cgaa gggaggA GU CGGAAC CACA CCU  ca     u
---uc    c       C  U      C    C   CC  uuaau 


Annotation confidence High
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Genome context
chrX: 40068460-40068549 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from eca-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-532-5p

Accession MIMAT0013235
Description Equus caballus eca-miR-532-5p mature miRNA
Sequence 19 - CAUGCCUUGAGUGUAGGACCGU - 40
Evidence not_experimental

Mature eca-miR-532-3p

Accession MIMAT0013236
Description Equus caballus eca-miR-532-3p mature miRNA
Sequence 56 - CCUCCCACACCCAAGGCUUGCA - 77
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131