Stem-loop sequence bmo-mir-306b

Accession MI0012989
Previous IDs bmo-mir-306-as
Description Bombyx mori miR-306b stem-loop
Gene family MIPF0000313; mir-306
Stem-loop
- a  --    g  g   c  g   c         accg 
 g gc  ccgc cu agg ac agg ggcucugag    g
 | ||  |||| || ||| || ||| |||||||||     
 c cg  ggcg ga ucc ug ucc cugagacuc    c
g c  cc    -  g   a  a   a         acca 
Get sequence
Deep sequencing
38 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2839: 30904-30979 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-306b
bmo-mir-9b nscaf2839: 31358-31447 [-]
bmo-mir-79 nscaf2839: 31354-31453 [+]
bmo-mir-306b nscaf2839: 30904-30979 [-]
bmo-mir-306a nscaf2839: 30888-30995 [+]
bmo-mir-9c nscaf2839: 28891-28998 [+]

Mature sequence bmo-miR-306b

Accession MIMAT0013782
Previous IDs bmo-miR-306-as
Sequence

11 - 

ugaggcacgaggcggcucuga

 - 31

Get sequence
Deep sequencing 38 reads, 3 experiments
Evidence not experimental

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).