Stem-loop bmo-mir-1b

Accession

MI0012994

Description

Bombyx mori bmo-mir-1b precursor miRNA

Gene family

MIPF0000038; mir-1

Literature search

12 open access papers mention bmo-mir-1b
(52 sentences)

Sequence

1080721 reads, 27 reads per million, 3 experiments

ccgcgcagcuCCAUACUUCUUUACAUUCCAUAugauuacaaugacuaUGGGAAGUAAGGAAGCACGGAAcuugcgcaag
..((((((.(((...(((((((((.((((((((.((....)).).))))))).)))))))))...))).).)))))...

Structure

-cc     - c   AUA         A       - g  u 
   gcgca g uCC   CUUCUUUAC UUCCAUA u au a
   ||||| | |||   ||||||||| ||||||| | ||  
   cgcgu c AGG   GAAGGAAUG AGGGUau a ua c
gaa     u A   CAC         A       c g  a 

Annotation confidence Not enough data

Genome context

NW_004582020.1: 5628058-5628136 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-1b

Mature bmo-miR-1b-5p

• Accession: MIMAT0013787
• Description: Bombyx mori bmo-miR-1b-5p mature miRNA
• Sequence: 11 - CCAUACUUCUUUACAUUCCAUA - 32
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-1b-3p

• Accession: MIMAT0013788
• Description: Bombyx mori bmo-miR-1b-3p mature miRNA
• Sequence: 48 - UGGGAAGUAAGGAAGCACGGAA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148