Stem-loop sequence mmu-mir-2861

Accession

MI0013007 (change log)

Symbol

MGI:Mir2861

Description

Mus musculus miR-2861 stem-loop

Gene family

MIPF0000963; mir-2861

Literature search

8 open access papers mention mmu-mir-2861
(26 sentences)

Stem-loop

      c    cag     g  c  -  u       c    acu 
5' cuc ucug   cuccg cu cc cc ggccucc ggga   a
   ||| ||||   ||||| || || || ||||||| ||||    
3' gag aggc   gaggc gg gg gg ccggggg cccu   c
      a    -ca     g  c  c  u       a    gaa 

Deep sequencing

161 reads, 2.82e+03 reads per million, 30 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 32712807-32712888 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000075916 ; Cdk9-006; 5'UTR (exon 1)

  ENSMUST00000123170 ; Cdk9-006; 5'UTR (exon 1)

Clustered miRNAs

< 10kb from mmu-mir-2861

• mmu-mir-3960: chr2: 32712900-32712972 [-]
• mmu-mir-2861: chr2: 32712807-32712888 [-]

Database links

• EntrezGene:Mir2861
• MGI:Mir2861
• miRBase Tracker:MI0013007

Mature sequence mmu-miR-2861

• Accession: MIMAT0013803
• Sequence: 52 - ggggccuggcggcgggcgg - 70
• Deep sequencing: 14 reads, 9 experiments
• Evidence: experimental; cloned [1], Northern [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-2861
  • miRDB:mmu-miR-2861
  • microrna.org:mmu-miR-2861

References

1. PMID:19920351 "A novel microRNA targeting HDAC5 regulates osteoblast differentiation in mice and contributes to primary osteoporosis in humans" Li H, Xie H, Liu W, Hu R, Huang B, Tan YF, Xu K, Sheng ZF, Zhou HD, Wu XP, Luo XH J Clin Invest. 119:3666-3677(2009).