miRBase entry: ola-mir-430c-2

Stem-loop ola-mir-430c-2

Accession

MI0013011

Description

Oryzias latipes ola-mir-430c-2 precursor miRNA

Gene family

MIPF0000003; mir-430

Literature search

3 open access papers mention ola-mir-430c-2
(10 sentences)

Sequence

gucggacauucagaugaccuuaacauaggcacugacuugaauuucuuugcagUAAGUGCUACAUGUUGGGGUAGucuuggugucuagc
((.(((((((.((((.((((((((((.((((((.(((..((.....))..))).))))))..)))))))))).)))).))))))).))

Structure

  c       c    g          -a      g   ug  u 
gu ggacauu agau accuuaacau  ggcacu acu  aa u
|| ||||||| |||| ||||||||||  |||||| |||  || u
cg ucugugg ucuG UGGGGUUGUA  UCGUGA Uga  uu c
  a       u    A          CA      A   cg  u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

4: 8194-8281 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ola-mir-430c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-430c

Accession	MIMAT0013805
Description	Oryzias latipes ola-miR-430c mature miRNA
Sequence	53 - UAAGUGCUACAUGUUGGGGUAG - 74
Evidence	experimental in-situ [1], Northern [1]

References

PubMed ID: 19770025
Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
"Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
"Gene (2010) 449:41-49