miRBase entry: ola-mir-430d-3

Stem-loop ola-mir-430d-3


Accession
MI0013020
Description
Oryzias latipes ola-mir-430d-3 precursor miRNA
Gene family
MIPF0000003; mir-430

Literature search
3 open access papers mention ola-mir-430d-3
(10 sentences)

Sequence

gaaucgcuucgaggccaucucaaacagagacacugaugguuuugauuuccUAAGUGCUUCUCUUUGGGGUUGucucaauguugguuu
(((((((...(((((.((((((((.((((.((((...((.........))..)))).)))).)))))))).)))))...).))))))

Structure
      - uuc     c        c    a    gau  uuu 
gaaucg c   gaggc aucucaaa agag cacu   gg   u
|||||| |   ||||| |||||||| |||| ||||   ||   g
uuuggu g   cucuG UGGGGUUU UCUU GUGA   cc   a
      u uaa     U        C    C    -AU  uuu 


Annotation confidence Not enough data
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Genome context
4: 2069008-2069094 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ola-mir-430d-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-430d

Accession MIMAT0013807
Description Oryzias latipes ola-miR-430d mature miRNA
Sequence 51 - UAAGUGCUUCUCUUUGGGGUUG - 72
Evidence experimental
in-situ [1], Northern [1]

References

  1. PubMed ID: 19770025
    Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
    "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
    "Gene (2010) 449:41-49