miRBase entry: osa-MIR2871b

Stem-loop osa-MIR2871b


Accession
MI0013036
Description
Oryza sativa osa-MIR2871b precursor miRNA
Gene family
MIPF0000986; MIR2871

Literature search
2 open access papers mention osa-MIR2871b
(4 sentences)

Sequence

20 reads, 15 reads per million, 2 experiments
auggcugcccacCAUGGUGACCGUAGAAACUAACAUagaaaaagagguagauaucucaagugacuuuguucauuuacguuggaauagacaaguaacuaccuuuucUAUUUUAGUUUCUAUGGUCACuaugguggcagccau
(((((((((.(((((((((((((((((((((((.((((((...(((((((.(((...........(((((.((((......)))).)))))))).))))))))))))).))))))))))))))))))))))))))))))))

Structure
         c                       C      aaa       a   cucaagugacu     c    ac 
auggcugcc acCAUGGUGACCGUAGAAACUAA AUagaa   gagguag uau           uuguu auuu  g
||||||||| ||||||||||||||||||||||| ||||||   ||||||| |||           ||||| ||||   
uaccgacgg ugguauCACUGGUAUCUUUGAUU UAUcuu   uuccauc aug           aacag uaag  u
         -                       U      ---       a   -----------     a    gu 


Annotation confidence Not enough data
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Genome context
Chr4: 8340799-8340939 [+]

Database links

Mature osa-miR2871b-3p

Accession MIMAT0013821
Description Oryza sativa osa-miR2871b-3p mature miRNA
Sequence 106 - UAUUUUAGUUUCUAUGGUCAC - 126
Evidence experimental
Illumina [1-3]
Database links

Mature osa-miR2871b-5p

Accession MIMAT0037363
Description Oryza sativa osa-miR2871b-5p mature miRNA
Sequence 13 - CAUGGUGACCGUAGAAACUAACAU - 36
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 22158467
    Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
    "Plant Cell (2011) 23:4185-4207

  3. PubMed ID: 26083154
    MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
    "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
    "RNA Biol (2015) 12:847-863