miRBase entry: osa-MIR2876

Stem-loop osa-MIR2876


Accession
MI0013041
Description
Oryza sativa osa-MIR2876 precursor miRNA

Literature search
3 open access papers mention osa-MIR2876
(8 sentences)

Sequence

uuuuugaggaAAUUGCUGGCAGCACUGUUUAuauagaaauuucuguaaaauaauugcuccugagcuuguguuugucauaaauguuaguuguuacuguagauguuucuuuccuuaaaaguuucccuaaacauucuugcuuguuuacaggaaUUCCUAUAUGAACACUGUUGCcagcaauuug
.........(((((((((((((((.(((((((((((.((((((((((((......(((....)))(((((.....)))))....((((....))))..(((((((((((.....)))).......)))))))........)))))))))))).))))))))))).))))))))))))))).

Structure
uuuuugagg               C           a            auaauugcuccugagcuuguguuugucauaaauguuaguuguuacugua       -------    c 
         aAAUUGCUGGCAGCA UGUUUAuauag aauuucuguaaa                                                 gauguuu       cuuu c
         ||||||||||||||| ||||||||||| ||||||||||||                                                 |||||||       |||| u
         uuuaacgacCGUUGU ACAAGUAUAUC UUaaggacauuu                                                 uuacaaa       gaaa u
--------g               C           C            -----------------------------------------guucguuc       ucccuuu    a 


Annotation confidence Not enough data
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Genome context
Chr6: 17008975-17009155 [-]

Database links

Mature osa-miR2876-3p

Accession MIMAT0013826
Description Oryza sativa osa-miR2876-3p mature miRNA
Sequence 151 - UUCCUAUAUGAACACUGUUGC - 171
Evidence experimental
Illumina [1]

Mature osa-miR2876-5p

Accession MIMAT0020949
Description Oryza sativa osa-miR2876-5p mature miRNA
Sequence 11 - AAUUGCUGGCAGCACUGUUUA - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 21679406
    Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
    Wei LQ, Yan LF, Wang T
    Genome Biol (2011) 12:R53