miRBase entry: osa-MIR2879

Stem-loop osa-MIR2879


Accession
MI0013045
Description
Oryza sativa osa-MIR2879 precursor miRNA

Literature search
2 open access papers mention osa-MIR2879
(2 sentences)

Sequence

3 reads, 4 reads per million, 2 experiments
ugcccagacgcgcucuggucauuauucuaacauauccggaucaacuggagagagaauuuuuagaaaggauguuugugcacuuguucaaccuguuuaacaaucacaaucagaucacaaaagauuauacugacacuaaauucaucugaucuaguacuuuauuuuuccgcauaaugccucuuguuuugacuacuugaucauuuuuagauguuugucaauggauggcacgaggguaaaagcgccauuuauaaaauuuaaucucuccaauugaGCCAGAUGUGUUAAAAUAAUGACCauaguaugu
.......(((.(((.(((((((((((.(((((((((.((.((((.(((((((((((((((..(((.((.(((((.(((.((((((((.((...................((((......))))..((.(((((((((......(((((.((((.((.........(((...)))..........)).)))).)))))..))))).)))).))....)).))).))))).))).))))))).)))..)))))))..)))))))).)))).)).))))))))).))))))))))).))).)))

Structure
ugcccag   c   c           c         c  a    c        --       ua   a  a     g   a     -   a  uguuuaacaaucacaaucagaucacaaaagauuau  u    -     uucauc     u    c  -uauuuuucc   u 
       acg gcu uggucauuauu uaacauauc gg ucaa uggagaga  gaauuuu  gaa gg uguuu ugc cuugu uca cc                                   ac gaca cuaaa      ugauc agua uu          gca  
       ||| ||| ||||||||||| ||||||||| || |||| ||||||||  |||||||  ||| || ||||| ||| ||||| ||| ||                                   || |||| |||||      ||||| |||| ||          ||| a
       ugu uga aCCAGUAAUAA AUUGUGUAG CC aguu accucucu  uuuaaaa  uuu cc gcgaa aug gagca ggu gg                                   ug uugu gauuu      acuag ucau ag          cgu  
-------   a   u           A         A  G    a        aa       ua   a  -     a   g     c   a  -------------------------------uaac  u    a     ----uu     u    c  uuuuguucuc   a 


Annotation confidence Not enough data
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Genome context
Chr2: 18895908-18896208 [-]

Database links

Mature osa-miR2879

Accession MIMAT0013831
Description Oryza sativa osa-miR2879 mature miRNA
Sequence 269 - GCCAGAUGUGUUAAAAUAAUGACC - 292
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435