Stem-loop sequence osa-MIR396g

Accession

MI0013047 (change log)

Description

Oryza sativa miR396g stem-loop

Gene family

MIPF0000882; MIR396_2

Literature search

53 open access papers mention osa-MIR396g
(131 sentences)

Stem-loop

   --     cguc   g   gg     -   gag      c  ga aggag g   g     g      ----a   g -g     ---------  g     u 
5'   ggcga    gag cgu  aagga guc   guggag ug  g     c ccg cgccg cgccgu     gcu g  cgcgu         cg cgucg g
     |||||    ||| |||  ||||| |||   |||||| ||  |     | ||| ||||| ||||||     ||| |  |||||         || ||||| c
3'   ccguu    cuu gca  uucuu cgg   caccuu ac  c     g ggc gcggc gcggca     cgg c  gcgcg         gc gcggc g
   cg     ----   g   ag     u   --a      u  gg ---gg g   g     g      gaugg   g ag     agagguaga  g     g 

Deep sequencing

2115 reads, 1.3e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr6: 5300630-5300810 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013047

Mature sequence osa-miR396g

• Accession: MIMAT0013833
• Sequence: 151 - uccacaggcuuucuugaacgg - 171
• Deep sequencing: 2112 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000522131_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).