miRBase entry: osa-MIR396g

Stem-loop osa-MIR396g


Accession
MI0013047
Description
Oryza sativa osa-MIR396g precursor miRNA
Gene family
MIPF0000882; MIR396_2

Literature search
53 open access papers mention osa-MIR396g
(131 sentences)

Sequence

1616 reads, 1122 reads per million, 2 experiments
ggcgacgucgaggcguggaaggagucgagguggagcuggagaggagcgccggcgccggcgccguagcugggcgcgucggcgucgugcggcggcggcgagauggagagcgcggacgggcgguagacggcggcggcggcggggggcggcauuUCCACAGGCUUUCUUGAACGGuucuugccgc
(((((....(((.(((..((((((((...(((((((((........(.(((.(((((.((((((.(((..((.((((.(((((((...((....))...)))....)))).)))).)))))..)))))).))))).))).)..))))...))))).))).)))))..))).))))))))..

Structure
--     cguc   g   gg     -   gag     ---    gagaggag g   g     g      -a   gg  g    g    ----   gcg  g 
  ggcga    gag cgu  aagga guc   gugga   gcug        c ccg cgccg cgccgu  gcu  gc cguc gcgu    cgu   gc g
  |||||    ||| |||  ||||| |||   |||||   ||||        | ||| ||||| ||||||  |||  || |||| ||||    |||   ||  
  ccguu    cuu GCA  UUCUU CGG   CACCU   cggc        g ggc gcggc gcggca  ugg  cg gcag cgcg    gua   cg c
cg     ----   G   AG     U   --A     uua    ------gg g   g     g      ga   --  g    g    agag   gag  g 


Annotation confidence Not enough data
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Genome context
Chr6: 5300630-5300810 [-]

Database links

Mature osa-miR396g

Accession MIMAT0013833
Description Oryza sativa osa-miR396g mature miRNA
Sequence 151 - UCCACAGGCUUUCUUGAACGG - 171
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435