miRBase entry: bta-mir-2887-1

Stem-loop bta-mir-2887-1


Accession
MI0013060
Description
Bos taurus bta-mir-2887-1 precursor miRNA
Gene family
MIPF0001042; mir-2887

Literature search
4 open access papers mention bta-mir-2887-1
(5 sentences)

Sequence

4875 reads, 1048 reads per million, 75 experiments
cguCGGGACCGGGGUCCGGUGCGgagagcccuucgucccgggacacggggcgcggcc
.((((.(.(((...(((((.((((((....)))))).)))))...)))..).)))).

Structure
c    G -A   GGG     U      a 
 guCG G  CCG   UCCGG GCGgag g
 |||| |  |||   ||||| ||||||  
 cggc c  ggc   gggcc ugcuuc c
c    g gg   aca     c      c 


Annotation confidence Not enough data
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Genome context
chr2: 66499737-66499793 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2887-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2887

Accession MIMAT0013845
Description Bos taurus bta-miR-2887 mature miRNA
Sequence 4 - CGGGACCGGGGUCCGGUGCG - 23
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19765282
    Identification and characterization of miRNAs expressed in the bovine ovary
    Hossain MM, Ghanem N, Hoelker M, Rings F, Phatsara C, Tholen E, Schellander K, Tesfaye D
    BMC Genomics (2009) 10:443