miRBase entry: ssc-mir-199a-2

Stem-loop ssc-mir-199a-2


Accession
MI0013093
Description
Sus scrofa ssc-mir-199a-2 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
18 open access papers mention ssc-mir-199a-2
(104 sentences)

Sequence

3820 reads, 1134 reads per million, 15 experiments
ccccgccaaCCCAGUGUUCAGACUACCUGUUCagggggcucugaauguguACAGUAGUCUGCACAUUGGUUAggcugggc
(((.(((...(((((((.((((((((.((((((((....)))))......))))))))))).)))))))...))).))).

Structure
-   c   aaC       U        C   ------     g 
 ccc gcc   CCAGUGU CAGACUAC UGU      UCagg g
 ||| |||   ||||||| |||||||| |||      |||||  
 ggg cgg   GGUUACA GUCUGAUG ACA      agucu g
c   u   AUU       C        -   ugugua     c 


Annotation confidence High
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Genome context
chr2: 69991779-69991858 [-]

Database links

Mature ssc-miR-199a-5p

Accession MIMAT0013874
Description Sus scrofa ssc-miR-199a-5p mature miRNA
Sequence 10 - CCCAGUGUUCAGACUACCUGUUC - 32
Evidence experimental
cloned [1], Illumina [2-3]

Mature ssc-miR-199a-3p

Accession MIMAT0013875
Description Sus scrofa ssc-miR-199a-3p mature miRNA
Sequence 51 - ACAGUAGUCUGCACAUUGGUUA - 72
Evidence experimental
cloned [1], Illumina [2-4]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100