miRBase entry: ssc-mir-320

Stem-loop ssc-mir-320


Accession
MI0013097
Description
Sus scrofa ssc-mir-320 precursor miRNA
Gene family
MIPF0000163; mir-320

Literature search
9 open access papers mention ssc-mir-320
(22 sentences)

Sequence

753 reads, 251 reads per million, 12 experiments
gcuccccuccgccuucucuucccgguucuucccggagucgggAAAAGCUGGGUUGAGAGGGCGAAaaaggaagaggggac
..((((((((((((((((..(((((((.((((((....)))))).)))))))..))))))))).........))))))).

Structure
gc       ---------         uu       c      g 
  uccccuc         cgccuucuc  cccgguu uucccg a
  |||||||         |||||||||  ||||||| ||||||  
  aggggag         GCGGGAGAG  GGGUCGA AAgggc g
-c       aaggaaaAA         UU       A      u 


Annotation confidence Not enough data
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Genome context
chr14: 6954934-6955013 [-]

Database links

Mature ssc-miR-320

Accession MIMAT0013878
Description Sus scrofa ssc-miR-320 mature miRNA
Sequence 43 - AAAAGCUGGGUUGAGAGGGCGAA - 65
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100