Stem-loop ssc-mir-181d

Accession

MI0013108

Description

Sus scrofa ssc-mir-181d precursor miRNA

Literature search

26 open access papers mention ssc-mir-181d
(50 sentences)

Sequence

271524 reads, 216.0 reads per million, 212 experiments

ucacaaucAACAUUCAUUGUUGUCGGUGGGUUgugagacggaggccagacCCACCGAGGGAUGAAUGUCAcuguggcugg
.((((....(((((((((....((((((((((.((.(.(....))))))))))))))..)))))))))...)))).....

Structure

----u    aucA         GUUG          g  a a g 
     caca    ACAUUCAUU    UCGGUGGGUU ug g c g
     ||||    |||||||||    |||||||||| || | |  
     gugu    UGUAAGUAG    AGCCACCcag ac c g a
ggucg    -cAC         --GG          -  - - g 

Annotation confidence High

Genome context

chr2: 65553487-65553566 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-181d

Mature ssc-miR-181d-5p

• Accession: MIMAT0013888
• Description: Sus scrofa ssc-miR-181d-5p mature miRNA
• Sequence: 9 - AACAUUCAUUGUUGUCGGUGGGUU - 32
• Evidence: experimental ; Illumina [1-4]

Mature ssc-miR-181d-3p

• Accession: MIMAT0017375
• Description: Sus scrofa ssc-miR-181d-3p mature miRNA
• Sequence: 51 - CCACCGAGGGAUGAAUGUCA - 70
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100