Stem-loop ssc-mir-125a

Accession

MI0013115

Description

Sus scrofa ssc-mir-125a precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

14 open access papers mention ssc-mir-125a
(36 sentences)

Sequence

1883 reads, 458 reads per million, 14 experiments

ggccucugagUCCCUGAGACCCUUUAACCUGUGaggacauccagggucacaggugagguucuugggagccuggcguccgg
.(((...(..((((.((((.((((..((((((((((....))....)))))))))))).))))))))..).)))......

Structure

-----g   ucu ag    U    C    UA        ----  a 
      gcc   g  UCCC GAGA CCUU  ACCUGUGa    gg c
      |||   |  |||| |||| ||||  ||||||||    ||  
      cgg   c  aggg uucu ggag  uggacacu    cc a
ggccug   --u cg    -    u    --        ggga  u 

Annotation confidence Not enough data

Genome context

chr6: 51858852-51858931 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-125a

Mature ssc-miR-125a

• Accession: MIMAT0013897
• Description: Sus scrofa ssc-miR-125a mature miRNA
• Sequence: 11 - UCCCUGAGACCCUUUAACCUGUG - 33
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100