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miRBase |
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Stem-loop sequence ssc-mir-500 |
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Accession | MI0013166 (change log) | |||||||||
Description | Sus scrofa miR-500 stem-loop | |||||||||
Gene family | MIPF0000139; mir-500 | |||||||||
Literature search |
3 open access papers mention ssc-mir-500 | |||||||||
Stem-loop |
----ccc -u uac ug agag ugu 5' cucuc aauccuugc c ggug ugc g ||||| ||||||||| | |||| ||| u 3' gagag uuaggaacg g ccac acg g cgagagu uc --- gu -gua uaa |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-500-5p |
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Accession | MIMAT0037369 |
Sequence |
9 - uaauccuugcuaccugggugaga - 31 |
Deep sequencing | 317 reads, 15 experiments |
Evidence | experimental; Illumina [4] |
Mature sequence ssc-miR-500-3p |
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Accession | MIMAT0013956 |
Sequence |
48 - augcaccugggcaaggauucu - 68 |
Deep sequencing | 915 reads, 15 experiments |
Evidence | experimental; Illumina [1,3], cloned [2] |
References |
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1 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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2 |
PMID:20180025
"Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
Mol Biol Rep. 37:3567-3574(2010).
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3 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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4 |
PMID:25230983
"The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing"
J Appl Genet. 56:239-252(2015).
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