miRBase entry: ssc-mir-769

Stem-loop ssc-mir-769


Accession
MI0013168
Description
Sus scrofa ssc-mir-769 precursor miRNA
Gene family
MIPF0000727; mir-769

Literature search
1 open access papers mention ssc-mir-769
(1 sentences)

Sequence

24 reads, 40 reads per million, 8 experiments
ugcgcucugaccUGAGACCUCUGGGUUCUGAGCugugauguugcuuccaagCUGGGAUCUCUGGGGUCUUGGUUcagggu
...(((((((.((((((((((.(((.(((.((((..((.......))..)))).))).))).)))))))))).)))))))

Structure
ugc       c          U   U   G    gu  ug 
   gcucuga cUGAGACCUC GGG UCU AGCu  ga  u
   ||||||| |||||||||| ||| ||| ||||  ||  u
   ugggacU GGUUCUGGGG CUC AGG UCga  cu  g
---       U          U   U   G    ac  uc 


Annotation confidence Not enough data
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Genome context
chr6: 47579825-47579904 [+]

Database links

Mature ssc-miR-769-3p

Accession MIMAT0013958
Description Sus scrofa ssc-miR-769-3p mature miRNA
Sequence 52 - CUGGGAUCUCUGGGGUCUUGGUU - 74
Evidence experimental
Illumina [1-3]

Mature ssc-miR-769-5p

Accession MIMAT0020363
Description Sus scrofa ssc-miR-769-5p mature miRNA
Sequence 13 - UGAGACCUCUGGGUUCUGAGC - 33
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100