Stem-loop zma-MIR156l

Accession

MI0013184

Description

Zea mays zma-MIR156l precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

51 open access papers mention zma-MIR156l
(339 sentences)

Sequence

126596 reads, 131948 reads per million, 137 experiments

gUGACAGAAGAGAGUGAGCACacggccgggcggaacggcaccggcggaugugccgucgcggccgcguGCUCACUGCUCUAUCUGUCACCc
(((((((((((((((((((((.((((((.(....(((((((........)))))))).)))))).))))))))).)))).))))))))..

Structure

--        -    -         a      g cgga       cgg 
  gUGACAGA AGAG AGUGAGCAC cggccg g    acggcac   c
  |||||||| |||| ||||||||| |||||| |    |||||||    
  CACUGUCU UCUC UCACUCGug gccggc c    ugccgug   g
cC        A    G         c      g ----       uag 

Annotation confidence High

Genome context

chr5: 188595332-188595421 [-]

Mature zma-miR156l-5p

• Accession: MIMAT0013973
• Description: Zea mays zma-miR156l-5p mature miRNA
• Sequence: 2 - UGACAGAAGAGAGUGAGCAC - 21
• Evidence: experimental ; Illumina [1]

Mature zma-miR156l-3p

• Accession: MIMAT0015308
• Description: Zea mays zma-miR156l-3p mature miRNA
• Sequence: 68 - GCUCACUGCUCUAUCUGUCACC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716