Stem-loop sequence zma-MIR159f

Accession

MI0013186 (change log)

Description

Zea mays miR159f stem-loop

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159f
(155 sentences)

Stem-loop

   --        uc   u     u  ag  u  uuc  aa    -   u c   g    u     guuc    uau         uccauguuugcgugucuucgagagga 
5'   ggagcucc  uca uccaa ga  gg cc   cg  gggu ggu c gcu cucg ucaug    ccac   ccuaucuca                          a
     ||||||||  ||| ||||| ||  || ||   ||  |||| ||| | ||| |||| |||||    ||||   |||||||||                           
3'   ucucgagg  agu agguu cu  cc gg   gu  ccca cca g cga gagc aguac    ggug   ggauagagu                          g
   cg        ga   u     u  cg  -  -uc  gc    g   c u   g    c     guuu    uuc         uuuccgcugguguccuuagagaaggc 

Deep sequencing

11923 reads, 4.44e+03 reads per million, 203 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 25007834-25008048 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075CE48_4577
• miRBase Tracker:MI0013186

Mature sequence zma-miR159f-5p

• Accession: MIMAT0015310
• Previous IDs: zma-miR159f*
• Sequence: 2 - gagcuccucucauuccaauga - 22
• Deep sequencing: 7 reads, 3 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR159f-3p

• Accession: MIMAT0013975
• Previous IDs: zma-miR159f
• Sequence: 194 - uuuggauugaagggagcucug - 214
• Deep sequencing: 10032 reads, 195 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000035D5E3_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).