miRBase entry: zma-MIR159g

Stem-loop zma-MIR159g


Accession
MI0013187
Description
Zea mays zma-MIR159g precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
30 open access papers mention zma-MIR159g
(151 sentences)

Sequence

264 reads, 1245 reads per million, 110 experiments
aguuugauucacuagaccugauccccuagacuagacggucuggucuuaaggcgGUGCUCCCUUCACACCAAUAAacggucgaucugaugggugguacagcugcucguucaugguucccacugucccaucucaucagagagagagaagaucaugagagagcgagagaugcuugagaugggcuugugguuugcaugaccgaggagcugccucguccccuucguugaccgcugUUUGGAGUGAAGGGAGUUCUGc
.............(((((.((((..(((...)))..)))).)))))....((((.(((((((((((.((((..(.((((((((..((.((((((..(((((.((((.(((((....((((...((((((((.(((((...........)).)))..((((.......))))))))))))...))))....))))).)))).)))))..))).)))..)))))))))).)..)))).))))))))))).))))

Structure
aguuugauucacuagaccugauccccuagacuagacggucuggucuuaag    U           A    UA a        cu  -u   -   ua     g    u     guuc    ugu        aucagagagagagaagauc 
                                                  gcgG GCUCCCUUCAC CCAA  A cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuc                   a
                                                  |||| ||||||||||| ||||  | ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   ||||||||                    
                                                  cGUC UGAGGGAAGUG GGUU  u gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagag                   u
--------------------------------------------------    U           A    Ug c        --  uc   u   cc     g    c     guuu    uuc        uucguagagagcgagagag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature zma-miR159g-5p

Accession MIMAT0015311
Description Zea mays zma-miR159g-5p mature miRNA
Sequence 54 - GUGCUCCCUUCACACCAAUAA - 74
Evidence experimental
Illumina [1]

Mature zma-miR159g-3p

Accession MIMAT0013976
Description Zea mays zma-miR159g-3p mature miRNA
Sequence 231 - UUUGGAGUGAAGGGAGUUCUG - 251
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716