Stem-loop sequence zma-MIR159h

Accession

MI0013188 (change log)

Description

Zea mays miR159h stem-loop

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159h
(157 sentences)

Stem-loop

   --  u           a    uaaa        cu  -u   -   ua     g    u     guuc    ugu         ucagagagagagaagauc 
5'   gg gcucccuucac ccaa    cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuca                  g
     || ||||||||||| ||||    ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||                   
3'   uc cgagggaagug gguu    gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagagu                  u
   cg  u           a    uguc        --  uc   u   cc     g    c     guuu    uuc         ucguagagagcgagagag 

Deep sequencing

6675 reads, 1.1e+03 reads per million, 172 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (B73_RefGen_v4; GCA_000005005.6)	Overlapping transcripts
chr8: 10885935-10886134 [+]	intergenic
chr8: 10908489-10908688 [+]	intergenic

Database links

• miRBase Tracker:MI0013188

Mature sequence zma-miR159h-5p

• Accession: MIMAT0015312
• Previous IDs: zma-miR159h*
• Sequence: 2 - gugcucccuucacaccaauaa - 22
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR159h-3p

• Accession: MIMAT0013977
• Previous IDs: zma-miR159h
• Sequence: 179 - uuuggagugaagggagcucug - 199
• Deep sequencing: 6010 reads, 24 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).