Stem-loop zma-MIR159j

Accession

MI0013190

Description

Zea mays zma-MIR159j precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

32 open access papers mention zma-MIR159j
(158 sentences)

Sequence

5930 reads, 20514 reads per million, 113 experiments

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaaggcgGUGCUCCCUUCAAACCAAUAAacggucgaucugaugggugguacagcugcucguucaugguucccacugucccaucucaucagagagagagaagaucgugagagagcgagagaugcuugagaugggcuugugguuugcaugaccgaggagcugccucguccccuucguugaccgcugUUUGGAUUGAAGGGAGCUCUGc
.............(((((.((((..(((...)))..)))).)))))....((((.(((((((((((.((((..(.((((((((..((.((((((..(((((.((((.(((((....((((...(((((((((........((......((((......))))......)))))))))))...))))....))))).)))).)))))..))).)))..)))))))))).)..)))).))))))))))).))))

Structure

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaag    U           A    UA a        cu  -u   -   ua     g    u     guuc    ugu         ucagagag  agaaga    ga 
                                                  gcgG GCUCCCUUCAA CCAA  A cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuca        ag      ucgu  g
                                                  |||| ||||||||||| ||||  | ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   |||||||||        ||      ||||   
                                                  cGUC CGAGGGAAGUU GGUU  u gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagagu        uc      agcg  a
--------------------------------------------------    U           A    Ug c        --  uc   u   cc     g    c     guuu    uuc         --------  guagag    ag 

Annotation confidence Not enough data

Genome context

chr8: 10920901-10921152 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR159j

Mature zma-miR159j-5p

• Accession: MIMAT0015314
• Description: Zea mays zma-miR159j-5p mature miRNA
• Sequence: 54 - GUGCUCCCUUCAAACCAAUAA - 74
• Evidence: experimental ; Illumina [1]

Mature zma-miR159j-3p

• Accession: MIMAT0013979
• Description: Zea mays zma-miR159j-3p mature miRNA
• Sequence: 231 - UUUGGAUUGAAGGGAGCUCUG - 251
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716