Stem-loop sequence zma-MIR164e

Accession

MI0013193 (change log)

Description

Zea mays miR164e stem-loop

Gene family

MIPF0000045; MIR164

Literature search

28 open access papers mention zma-MIR164e
(203 sentences)

Stem-loop

   --       -a  a                      uuc    --c       cuc   g 
5'   guggaga  gc ggacacgugagcgaccauccag   cacu   ccgcugg   gcu c
     |||||||  || ||||||||||||||||||||||   ||||   |||||||   ||| u
3'   caccucu  cg ccuguguacuugcugguggguu   gugg   ggcggcc   cga g
   gc       cc  -                      uga    uuc       -cu   g 

Deep sequencing

10898 reads, 5.66e+03 reads per million, 193 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr1: 47137796-47137911 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075CE18_4577
• miRBase Tracker:MI0013193

Mature sequence zma-miR164e-5p

• Accession: MIMAT0013982
• Previous IDs: zma-miR164e
• Sequence: 2 - uggagaagcaggacacgugag - 22
• Deep sequencing: 3884 reads, 7 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000759FED_4577

Mature sequence zma-miR164e-3p

• Accession: MIMAT0015317
• Previous IDs: zma-miR164e*
• Sequence: 95 - cauguguccgcccucuccacc - 115
• Deep sequencing: 8 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).