Stem-loop sequence zma-MIR169l

Accession

MI0013199 (change log)

Description

Zea mays miR169l stem-loop

Literature search

32 open access papers mention zma-MIR169l
(226 sentences)

Stem-loop

   --     c                   uuccu    uu  ca   caa 
5'   guagc agggaugauuugccugugg     gucg  gc  ugc   u
     ||||| |||||||||||||||||||     ||||  ||  |||    
3'   caucg ucccuacuaaacgggcauc     uagc  ug  aug   g
   gc     -                   -----    -u  uc   ucc 

Deep sequencing

28 reads, 531 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr1: 303772025-303772113 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013199

Mature sequence zma-miR169l-5p

• Accession: MIMAT0013988
• Previous IDs: zma-miR169l
• Sequence: 2 - uagccagggaugauuugccug - 22
• Deep sequencing: 14 reads, 7 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR169l-3p

• Accession: MIMAT0015323
• Previous IDs: zma-miR169l*
• Sequence: 69 - ggcaaaucaucccugcuacc - 88
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).