Stem-loop sequence zma-MIR169m

Accession

MI0013200 (change log)

Description

Zea mays miR169m stem-loop

Gene family

MIPF0000832; MIR169_5

Literature search

30 open access papers mention zma-MIR169m
(215 sentences)

Stem-loop

   --              cu    u   -     u    ug        a    g 
5'   uuagccaagaaugg  ugcc auc uccau auuu  uucaucgc ggaa c
     ||||||||||||||  |||| ||| ||||| ||||  |||||||| ||||  
3'   aaucgguucuuacc  acgg uag aggug uaaa  agguagug ccuu c
   ug              -u    -   u     -    gu        -    c 

Deep sequencing

239 reads, 664 reads per million, 28 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 102365461-102365561 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075B52F_4577
• miRBase Tracker:MI0013200

Mature sequence zma-miR169m-5p

• Accession: MIMAT0013989
• Previous IDs: zma-miR169m
• Sequence: 2 - uagccaagaauggcuugccua - 22
• Deep sequencing: 3 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR169m-3p

• Accession: MIMAT0015324
• Previous IDs: zma-miR169m*
• Sequence: 81 - ggcauccauucuuggcuaag - 100
• Deep sequencing: 18 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075EB1B_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).