Stem-loop zma-MIR169o

Accession

MI0013202

Description

Zea mays zma-MIR169o precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

32 open access papers mention zma-MIR169o
(223 sentences)

Sequence

12 reads, 1048 reads per million, 8 experiments

gUAGCCAAGAAUGACUUGCCUAugcacgcccucuguuggcaguuccguccggcagccauggcgacgguugcacaaggugaguuuuugcggcguggaugaugcaauguggcugcaucGGCAGGUCUUCUUGGCUAGCca
.((((((((((.((((((((.((.((((((((((.(((((((..(((((.(.((....)).)))))))))).))).).))).......)))))).))((((((.......))))))))))))))))))))))))....

Structure

---g          U        ------------------U  g      -------   - g   -    uu     c g  g 
    UAGCCAAGAA GACUUGCC                   Au cacgcc       cuc u uug gcag  ccguc g ca c
    |||||||||| ||||||||                   || ||||||       ||| | ||| ||||  ||||| | ||  
    AUCGGUUCUU CUGGACGG                   ua gugcgg       gag g aac cguu  ggcag c gu c
acCG          -        cuacgucgguguaacguag  g      cguuuuu   u g   a    --     - g  a 

Annotation confidence Not enough data

Genome context

chr4: 13818178-13818315 [+]

Mature zma-miR169o-5p

• Accession: MIMAT0013991
• Description: Zea mays zma-miR169o-5p mature miRNA
• Sequence: 2 - UAGCCAAGAAUGACUUGCCUA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR169o-3p

• Accession: MIMAT0015326
• Description: Zea mays zma-miR169o-3p mature miRNA
• Sequence: 117 - GGCAGGUCUUCUUGGCUAGC - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716