miRBase entry: zma-MIR169q

Stem-loop zma-MIR169q


Accession
MI0013204
Description
Zea mays zma-MIR169q precursor miRNA
Gene family
MIPF0000832; MIR169_5

Literature search
31 open access papers mention zma-MIR169q
(217 sentences)

Sequence

6 reads, 40 reads per million, 3 experiments
uUAGCCAAGAAUGGCUUGCCUAucuccauuauuugguccaucuucuugggagaccucccucaugguguggauggaauguggaugguGGCAGGCCUUCUGGCUAAGu
(((((((.(((.((((((((.((((((((.((((.((((((((....((((....))))....)).)))))).))))))))).)))))))))))))))))))))..

Structure
--       A   U        U   -     u    g      -  ucuu    g 
  uUAGCCA GAA GGCUUGCC Auc uccau auuu guccau cu    ggga a
  ||||||| ||| |||||||| ||| ||||| |||| |||||| ||    ||||  
  AAUCGGU CUU CCGGACGG ugg aggug uaag uaggug gg    cccu c
uG       -   -        -   u     -    g      u  uacu    c 


Annotation confidence Not enough data
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Genome context
chr8: 130375286-130375391 [+]

Database links

Mature zma-miR169q-5p

Accession MIMAT0013993
Description Zea mays zma-miR169q-5p mature miRNA
Sequence 2 - UAGCCAAGAAUGGCUUGCCUA - 22
Evidence experimental
Illumina [1]

Mature zma-miR169q-3p

Accession MIMAT0015328
Description Zea mays zma-miR169q-3p mature miRNA
Sequence 87 - GGCAGGCCUUCUGGCUAAG - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716