miRBase entry: zma-MIR171l

Stem-loop zma-MIR171l


Accession
MI0013206
Description
Zea mays zma-MIR171l precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
19 open access papers mention zma-MIR171l
(50 sentences)

Sequence

383 reads, 1214 reads per million, 5 experiments
gUAUUGGCGUGCCUCAAUCCGAaggcguggcugacuggcgcggcagccauguucuuGGAUUGAGCCGCGUCAAUAUCu
(((((((((((.((((((((((.((((((((((.(((...))))))))))))).)))))))))).)))))))))))..

Structure
--           C          a          a   g 
  gUAUUGGCGUG CUCAAUCCGA ggcguggcug cug  
  ||||||||||| |||||||||| |||||||||| ||| c
  UAUAACUGCGC GAGUUAGGuu uuguaccgac ggc  
uC           C          c          -   g 


Annotation confidence High
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Genome context
chr1: 249547375-249547452 [+]

Database links

Mature zma-miR171l-5p

Accession MIMAT0015330
Description Zea mays zma-miR171l-5p mature miRNA
Sequence 2 - UAUUGGCGUGCCUCAAUCCGA - 22
Evidence experimental
Illumina [1]

Mature zma-miR171l-3p

Accession MIMAT0013995
Description Zea mays zma-miR171l-3p mature miRNA
Sequence 57 - GGAUUGAGCCGCGUCAAUAUC - 77
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716