miRBase entry: zma-MIR393c

Stem-loop zma-MIR393c


Accession
MI0013211
Description
Zea mays zma-MIR393c precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
22 open access papers mention zma-MIR393c
(72 sentences)

Sequence

207 reads, 555 reads per million, 4 experiments
cUCCAAAGGGAUCGCAUUGAUCUaaccugccgaucgacgccgacguacguacgugcccgaggacaagcagaucaGUCAGUGCAAUCCCUUUGGAAUu
.(((((((((((.(((((((.((...((((...((..((...((((....))))...))..))...))))...))))))))).)))))))))))...

Structure
--c           C       U  aac    cga  ga  ccg    a 
   UCCAAAGGGAU GCAUUGA CU   cugc   uc  cg   acgu c
   ||||||||||| ||||||| ||   ||||   ||  ||   ||||  
   AGGUUUCCCUA CGUGACU Ga   gacg   ag  gc   ugca g
uUA           A       -  cua    aac  ga  ccg    u 


Annotation confidence Low
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Genome context
chr10: 149451810-149451906 [-]

Database links

Mature zma-miR393c-5p

Accession MIMAT0014000
Description Zea mays zma-miR393c-5p mature miRNA
Sequence 2 - UCCAAAGGGAUCGCAUUGAUCU - 23
Evidence experimental
Illumina [1]
Database links

Mature zma-miR393c-3p

Accession MIMAT0015335
Description Zea mays zma-miR393c-3p mature miRNA
Sequence 75 - GUCAGUGCAAUCCCUUUGGAAU - 96
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716