Stem-loop zma-MIR395e

Accession

MI0013213

Description

Zea mays zma-MIR395e precursor miRNA

Literature search

18 open access papers mention zma-MIR395e
(85 sentences)

Sequence

4 reads, 235 reads per million, 3 experiments

aGUUCCCUUCAAGCACUUCACAUgaggcaccauucaaauaacacauuucaagauuaggugcauGUGAAGUGUUUGGGGGAACUCu
((((((((.((((((((((((((...(((((.........................)))))))))))))))))))))))))))..

Structure

--        U              gag     auucaaauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc           a
  |||||||| ||||||||||||||   |||||           c
  UCAAGGGG GUUUGUGAAGUGua   cgugg           a
uC        -              ---     auuagaacuuu 

Annotation confidence Not enough data

Genome context

chr2: 6286411-6286495 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from zma-MIR395e

Mature zma-miR395e-5p

• Accession: MIMAT0015337
• Description: Zea mays zma-miR395e-5p mature miRNA
• Sequence: 2 - GUUCCCUUCAAGCACUUCACAU - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395e-3p

• Accession: MIMAT0014002
• Description: Zea mays zma-miR395e-3p mature miRNA
• Sequence: 64 - GUGAAGUGUUUGGGGGAACUC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716