miRBase entry: zma-MIR395f

Stem-loop zma-MIR395f


Accession
MI0013214
Description
Zea mays zma-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395f
(88 sentences)

Sequence

2 reads, 6 reads per million, 2 experiments
aGUUACCUACAAGCACGUCUCGAuaccuuggcuuaauaaaggccaguuGUGAAGUGUUUGGGGGAACUCu
((((.(((.(((((((.((.((((....((((((.....)))))))))).)).))))))).)))))))..

Structure
--    A   A       G  U    accu      a 
  aGUU CCU CAAGCAC UC CGAu    uggcuu a
  |||| ||| ||||||| || ||||    |||||| u
  UCAA GGG GUUUGUG AG Guug    accgga a
uC    -   G       A  U    ----      a 


Annotation confidence Not enough data
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Genome context
chr2: 6276947-6277016 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from zma-MIR395f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395f-5p

Accession MIMAT0015338
Description Zea mays zma-miR395f-5p mature miRNA
Sequence 2 - GUUACCUACAAGCACGUCUCGA - 23
Evidence experimental
Illumina [1]

Mature zma-miR395f-3p

Accession MIMAT0014003
Description Zea mays zma-miR395f-3p mature miRNA
Sequence 49 - GUGAAGUGUUUGGGGGAACUC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716